Manual pages

Origin: NCBI.

[ Alias ↣ ] Name (section) Brief
amino-acid-composition(1) Report amino acid composition.
asn2all(1) Generate reports from ASN.1 biological data.
asn2asn(1) Convert NCBI data between text and binary ASN.1.
asn2ff(1) Convert ASN.1 biological data to a flat format (old version).
asn2fsa(1) Convert biological sequence data from ASN.1 to FASTA.
asn2gb(1) Convert ASN.1 biological data to a GenBank-style flat format.
asn2idx(1) Index ASN.1 Bioseq-sets for fast access to individual sequences.
asn2xml(1) Translate biological data from ASN.1 to XML.
asndhuff(1) Decompress compressed ASN.1 (CASN) files.
asndisc(1) Check ASN.1 biological sequence records for discrepancies.
asnmacro(1) Process ASN.1 biological data per Sequin macros.
asntool(1) Process ASN.1 module specifications.
asnval(1) Validate ASN.1 biological sequence records.
between-two-genes(1) Select a range of tab-delimited lines.
checksub(1) A validator for NCBI ASN.1 Seq-submit data.
cleanasn(1) Clean up irregularities in NCBI ASN.1 objects.
Cn3D-3.0(1) A 3-dimensional viewer for biological molecules.
ddv(1) DeuxD-Viewer for multiple sequence alignment.
debruijn(1) De Bruijn sequence generator.
eaddress(1) Check edirect's notion of your e-mail address.
ecitmatch(1) Look up a citation's PubMed ID.
econtact(1) Adjust contact information for an edirect pipeline.
edirect(1) Access NCBI Entrez from the command line.
edirutil(1) Synthesize NCBI ENTREZ_DIRECT XML (edirect pipeline state).
efetch(1) Retrieve results from an NCBI Entrez search.
efilter(1) Filter and/or sort NCBI Entrez search results.
einfo(1) Look up general NCBI Entrez database information.
elink(1) Look up related NCBI Entrez records.
enotify(1) Send e-mail with NCBI Entrez search results.
entrez(1) ↣ entrez2(1) A graphical client for the NCBI Entrez retrieval system.
entrez-phrase-search(1) Search NCBI Entrez for phrases.
entrez2(1) A graphical client for the NCBI Entrez retrieval system.
epost(1) Upload a batch of NCBI Entrez record identifiers.
eproxy(1) Load NCBI Entrez search aliases.
errhdr(1) Produce a C header file from a set of messages.
esearch(1) Search an NCBI Entrez database.
espell(1) Spell-correct an NCBI Entrez query.
esummary(1) ↣ efetch(1) Retrieve results from an NCBI Entrez search.
fa2htgs(1) Formatter for high throughput genome sequencing project submissions.
filter-stop-words(1) Filter out unindexed NCBI Entrez words.
findspl(1) Find protein splice sites.
ftp-cp(1) Download files from an FTP server.
ftp-ls(1) List directory entries on an FTP server.
gbf2xml(1) Convert GenBank flatfiles to INSDSeq XML.
gbseqget(1) Format sequences from GenBank as an XML GBSet.
gene2xml(1) Convert NCBI Entrez Gene ASN.1 into XML.
getmesh(1) Get MeSH terms from a Medline entry.
getpub(1) Look up Medline entries by UID.
gil2bin(1) Convert GenInfo integrated IDs to or from binary.
idfetch(1) Retrieve biological data from the NCBI ID1 server.
indexpub(1) Index an ASN.1 Pub-set by Medline UID.
insdseqget(1) Format sequences from GenBank as an XML INSDSet.
join-into-groups-of(1) Join input words into N-word groups.
makeset(1) Build a Bioseq-set from Seq-entries.
nquire(1) Query NCBI Entrez Utilities or other parameter-based web services.
Psequin(1) Submit sequences to Genbank, EMBL, and DDBJ.
reorder-columns(1) Reorder columns of a tab-delimited file.
run-ncbi-converter(1) Run a converter from NCBI's FTP site.
sbtedit(1) GenBank submission template editor.
sequin(1) ↣ Psequin(1) Submit sequences to Genbank, EMBL, and DDBJ.
sort-uniq-count(1) Print line frequencies.
sort-uniq-count-rank(1) ↣ sort-uniq-count(1) Print line frequencies.
sortbyquote(1) Sort C/C++ code by quoted regions.
spidey(1) Align mRNA sequences to a genome.
subfuse(1) Merge Genbank submissions.
taxblast(1) Annotate BLAST output with taxonomic details.
tbl2asn(1) Prepare a GenBank submission using an ASCII feature table.
trna2sap(1) Convert tRNAscan-SE output to an ASN.1 Seq-annot object.
trna2tbl(1) Convert tRNAscan-SE output to a Sequin feature table.
udv(1) OneD-Viewer for biological sequences.
vecscreen(1) Find nucleic acid segments of possible vector origin.
word-at-a-time(1) Parse an input file into alphanumeric words.
xtract(1) Convert XML into a table of data values.
XtractLazy(1) ↣ xtract(1) Convert XML into a table of data values.
xy-plot(1) Produce and display a line graph.