Manual pages
Origin: NCBI.
| [ Alias ↣ ] Name (section) | Brief |
|---|---|
| amino-acid-composition(1) | Report amino acid composition. |
| asn2all(1) | Generate reports from ASN.1 biological data. |
| asn2asn(1) | Convert NCBI data between text and binary ASN.1. |
| asn2ff(1) | Convert ASN.1 biological data to a flat format (old version). |
| asn2fsa(1) | Convert biological sequence data from ASN.1 to FASTA. |
| asn2gb(1) | Convert ASN.1 biological data to a GenBank-style flat format. |
| asn2idx(1) | Index ASN.1 Bioseq-sets for fast access to individual sequences. |
| asn2xml(1) | Translate biological data from ASN.1 to XML. |
| asndhuff(1) | Decompress compressed ASN.1 (CASN) files. |
| asndisc(1) | Check ASN.1 biological sequence records for discrepancies. |
| asnmacro(1) | Process ASN.1 biological data per Sequin macros. |
| asntool(1) | Process ASN.1 module specifications. |
| asnval(1) | Validate ASN.1 biological sequence records. |
| between-two-genes(1) | Select a range of tab-delimited lines. |
| checksub(1) | A validator for NCBI ASN.1 Seq-submit data. |
| cleanasn(1) | Clean up irregularities in NCBI ASN.1 objects. |
| Cn3D-3.0(1) | A 3-dimensional viewer for biological molecules. |
| ddv(1) | DeuxD-Viewer for multiple sequence alignment. |
| debruijn(1) | De Bruijn sequence generator. |
| eaddress(1) | Check edirect's notion of your e-mail address. |
| ecitmatch(1) | Look up a citation's PubMed ID. |
| econtact(1) | Adjust contact information for an edirect pipeline. |
| edirect(1) | Access NCBI Entrez from the command line. |
| edirutil(1) | Synthesize NCBI ENTREZ_DIRECT XML (edirect pipeline state). |
| efetch(1) | Retrieve results from an NCBI Entrez search. |
| efilter(1) | Filter and/or sort NCBI Entrez search results. |
| einfo(1) | Look up general NCBI Entrez database information. |
| elink(1) | Look up related NCBI Entrez records. |
| enotify(1) | Send e-mail with NCBI Entrez search results. |
| entrez(1) ↣ entrez2(1) | A graphical client for the NCBI Entrez retrieval system. |
| entrez-phrase-search(1) | Search NCBI Entrez for phrases. |
| entrez2(1) | A graphical client for the NCBI Entrez retrieval system. |
| epost(1) | Upload a batch of NCBI Entrez record identifiers. |
| eproxy(1) | Load NCBI Entrez search aliases. |
| errhdr(1) | Produce a C header file from a set of messages. |
| esearch(1) | Search an NCBI Entrez database. |
| espell(1) | Spell-correct an NCBI Entrez query. |
| esummary(1) ↣ efetch(1) | Retrieve results from an NCBI Entrez search. |
| fa2htgs(1) | Formatter for high throughput genome sequencing project submissions. |
| filter-stop-words(1) | Filter out unindexed NCBI Entrez words. |
| findspl(1) | Find protein splice sites. |
| ftp-cp(1) | Download files from an FTP server. |
| ftp-ls(1) | List directory entries on an FTP server. |
| gbf2xml(1) | Convert GenBank flatfiles to INSDSeq XML. |
| gbseqget(1) | Format sequences from GenBank as an XML GBSet. |
| gene2xml(1) | Convert NCBI Entrez Gene ASN.1 into XML. |
| getmesh(1) | Get MeSH terms from a Medline entry. |
| getpub(1) | Look up Medline entries by UID. |
| gil2bin(1) | Convert GenInfo integrated IDs to or from binary. |
| idfetch(1) | Retrieve biological data from the NCBI ID1 server. |
| indexpub(1) | Index an ASN.1 Pub-set by Medline UID. |
| insdseqget(1) | Format sequences from GenBank as an XML INSDSet. |
| join-into-groups-of(1) | Join input words into N-word groups. |
| makeset(1) | Build a Bioseq-set from Seq-entries. |
| nquire(1) | Query NCBI Entrez Utilities or other parameter-based web services. |
| Psequin(1) | Submit sequences to Genbank, EMBL, and DDBJ. |
| reorder-columns(1) | Reorder columns of a tab-delimited file. |
| run-ncbi-converter(1) | Run a converter from NCBI's FTP site. |
| sbtedit(1) | GenBank submission template editor. |
| sequin(1) ↣ Psequin(1) | Submit sequences to Genbank, EMBL, and DDBJ. |
| sort-uniq-count(1) | Print line frequencies. |
| sort-uniq-count-rank(1) ↣ sort-uniq-count(1) | Print line frequencies. |
| sortbyquote(1) | Sort C/C++ code by quoted regions. |
| spidey(1) | Align mRNA sequences to a genome. |
| subfuse(1) | Merge Genbank submissions. |
| taxblast(1) | Annotate BLAST output with taxonomic details. |
| tbl2asn(1) | Prepare a GenBank submission using an ASCII feature table. |
| trna2sap(1) | Convert tRNAscan-SE output to an ASN.1 Seq-annot object. |
| trna2tbl(1) | Convert tRNAscan-SE output to a Sequin feature table. |
| udv(1) | OneD-Viewer for biological sequences. |
| vecscreen(1) | Find nucleic acid segments of possible vector origin. |
| word-at-a-time(1) | Parse an input file into alphanumeric words. |
| xtract(1) | Convert XML into a table of data values. |
| XtractLazy(1) ↣ xtract(1) | Convert XML into a table of data values. |
| xy-plot(1) | Produce and display a line graph. |