SIMPLE SOLUTIONS

Manual pages

Origin: USER COMMANDS.

[ Alias ↣ ] Name (section) Brief
admesh(1) A program for processing triangulated solid meshes.
aesfix(1) Correct bit errors in an AES key schedules.
aeskeyfind(1) Locates 128-bit and 256-bit AES keys in a captured memory image.
appstream-compose(1) Generate AppStream metadata.
appstream-util(1) Manipulate AppStream, AppData and MetaInfo metadata.
apt-venv(1) Apt virtual environment.
argdist-bpfcc(8) Trace a function and display a histogram or frequency count of its parameter values. Uses Linux.
bashreadline-bpfcc(8) Print entered bash commands system wide. Uses Linux eBPF/bcc.
biolatency-bpfcc(8) Summarize block device I/O latency as a histogram.
biosnoop-bpfcc(8) Trace block device I/O and print details incl. issuing PID.
biotop-bpfcc(8) Block device (disk) I/O by process top.
bitesize-bpfcc(8) Summarize block device I/O size as a histogram - Linux eBPF/bcc.
bitesize-perf(8) Show disk I/O size as a histogram. Uses Linux perf_events.
bpflist-bpfcc(8) Display processes currently using BPF programs and maps.
bps-bpfcc(8) List all BPF programs. 'ps' for BPF programs.
btrfsdist-bpfcc(8) Summarize btrfs operation latency. Uses Linux eBPF/bcc.
btrfsslower-bpfcc(8) Trace slow btrfs file operations, with per-event details.
cachestat-bpfcc(8) Statistics for linux page cache hit/miss ratios. Uses Linux eBPF/bcc.
cachestat-perf(8) Measure page cache hits/misses. Uses Linux ftrace.
cachetop-bpfcc(8) Statistics for linux page cache hit/miss ratios per processes. Uses Linux eBPF/bcc.
capable-bpfcc(8) Trace security capability checks (cap_capable()).
cec-client(1) CEC connection client utility.
cec-config(1) CEC connection configuration utility.
cpudist-bpfcc(8) On- and off-CPU task time as a histogram.
cpuunclaimed-bpfcc(8) Sample CPU run queues and calculate unclaimed idle CPU. Uses Linux eBPF/bcc.
dbslower-bpfcc(8) Trace MySQL/PostgreSQL server queries slower than a threshold.
dbstat-bpfcc(8) Collect histograms of MySQL/PostgreSQL query latencies.
dcsnoop-bpfcc(8) Trace directory entry cache (dcache) lookups. Uses Linux eBPF/bcc.
dcstat-bpfcc(8) Directory entry cache (dcache) stats. Uses Linux eBPF/bcc.
deadlock_detector-bpfcc(8) Find potential deadlocks (lock order inversions) in a running program.
dnseval(1) Bulk ping utility that sends an arbitrary DNS query to a list of DNS servers.
dnsping(1) DNS ping utility.
dnstraceroute(1) DNS traceroute utility.
execsnoop-bpfcc(8) Trace new processes via exec() syscalls. Uses Linux eBPF/bcc.
execsnoop-perf(8) Trace process exec() with arguments. Uses Linux ftrace.
ext4dist-bpfcc(8) Summarize ext4 operation latency. Uses Linux eBPF/bcc.
ext4slower-bpfcc(8) Trace slow ext4 file operations, with per-event details.
f3dinfo(1) Field3D Info.
filelife-bpfcc(8) Trace the lifespan of short-lived files. Uses Linux eBPF/bcc.
fileslower-bpfcc(8) Trace slow synchronous file reads and writes.
filetop-bpfcc(8) File reads and writes by filename and process. Top for files.
fsniper(1) Watch directories and apply rules to newly created files.
funccount-bpfcc(8) Count function, tracepoint, and USDT probe calls matching a pattern. Uses Linux eBPF/bcc.
funccount-perf(8) Count kernel function calls matching specified wildcards. Uses Linux ftrace.
funcgraph-perf(8) Trace kernel function graph, showing child function calls and times. Uses Linux ftrace.
funclatency-bpfcc(8) Time functions and print latency as a histogram.
funcslower-bpfcc(8) Trace slow kernel or user function calls.
funcslower-perf(8) Trace kernel functions slower than a threshold (microseconds). Uses Linux ftrace.
functrace-perf(8) Trace kernel function calls matching specified wildcards. Uses Linux ftrace.
gethostlatency-bpfcc(8) Show latency for getaddrinfo/gethostbyname[2] calls. Uses Linux eBPF/bcc.
gsettings-data-convert(1) GConf to GSettings data migration.
gsettings-schema-convert(1) GConf to GSettings schema conversion.
hardirqs-bpfcc(8) Measure hard IRQ (hard interrupt) event time. Uses Linux eBPF/bcc.
hud-cli(1) Tool to exercise the HUD on the command line.
hud-dump-application(1) Tool to dump information on an application from the HUD usage database.
hud-list-applications(1) Tool to list the applications in the HUD usage database.
hud-verify-app-info(1) Tool to verify an app-info file that is expected to be used in the HUD.
iolatency-perf(8) Summarize block device I/O latency as a histogram. Uses Linux ftrace.
iosnoop-perf(8) Trace block I/O events as they occur. Uses Linux ftrace.
killsnoop-bpfcc(8) Trace signals issued by the kill() syscall. Uses Linux eBPF/bcc.
killsnoop-perf(8) Trace kill() syscalls with process and signal details. Uses Linux ftrace.
kprobe-perf(8) Trace a given kprobe definition. Kernel dynamic tracing. Uses Linux ftrace.
lirc-config-tool(1) Tool to scan and generate lirc config files.
llcstat-bpfcc(8) Summarize CPU cache references and misses by process. Uses Linux eBPF/bcc.
mcu8051ide(1)
mdflush-bpfcc(8) Trace md flush events. Uses Linux eBPF/bcc.
mdp(1) A command-line based markdown presentation tool.
memleak-bpfcc(8) Print a summary of outstanding allocations and their call stacks to detect memory leaks. Uses Linux.
mia-2davgmasked(1) Evaluate average intensities of an image series.
mia-2dbinarycombine(1) Combine two binary images.
mia-2dcost(1) Evaluate the similarity between two 2D images.
mia-2ddeform(1) Transform a 2D image by means of a vector field.
mia-2ddistance(1) Distance between binary masks.
mia-2deval-transformquantity(1) Evaluate derivative of a transformation.
mia-2dfluid(1) Fluid dynamic 2D registration.
mia-2dfluid-syn-registration(1) Non-linear registration of 2D images by using a diffeomorphic SyN reg‐.
mia-2dforce(1) Registering force between two 2D images.
mia-2dfuzzysegment(1) A fuzzy c-means segmentation of a 2D image.
mia-2dgrayimage-combine-to-rgb(1) Combine gray scale images to an rgb image.
mia-2dgroundtruthreg(1) Registration of a series of 2D images.
mia-2dimagecombine-dice(1) Evaluate the dice index between two binary 2D images.
mia-2dimagecombiner(1) Combine two 2D images.
mia-2dimagecreator(1) Create a synthetic 2D image.
mia-2dimagefilter(1) Run filters on a 2D image.
mia-2dimagefilterstack(1) Run filters on a series of 2D images.
mia-2dimagefullstats(1) Evaluate some stats over an image.
mia-2dimageregistration(1) Run a 2d image registration.
mia-2dimageselect(1) Select one image from a multi-record file.
mia-2dimageseries-maximum-intensity-projection(1) Evaluate maximum per-pixel intensities of an image.
mia-2dimagestack-cmeans(1) Calculate the c-means classification for a series of images.
mia-2dimagestats(1) Evaluate some statistics of a 2D image.
mia-2dlerp(1) Linearly combine two 2D images.
mia-2dmany2one-nonrigid(1) Registration of a series of 2D images.
mia-2dmulti-force(1) Registration force between two images.
mia-2dmultiimageregistration(1) Non-linear registration of 2D images.
mia-2dmultiimageto3d(1) Convert a 2D multi-record image to a 3D image.
mia-2dmultiimagevar(1) Evaluate the intensity variation of pixels in a series of images.
mia-2dmyocard-ica(1) Run an ICA analysis on a series of 2D images.
mia-2dmyocard-icaseries(1) Run an ICA analysis on a series of 2D images.
mia-2dmyocard-segment(1) Work in progress.
mia-2dmyoica-full(1) Run a registration of a series of 2D images.
mia-2dmyoica-nonrigid(1) Run a registration of a series of 2D images.
mia-2dmyoica-nonrigid-parallel(1) Run a registration of a series of 2D images.
mia-2dmyoica-nonrigid2(1) Run a registration of a series of 2D images.
mia-2dmyoicapgt(1) Run a registration of a series of 2D images.
mia-2dmyomilles(1) Run a registration of a series of 2D images.
mia-2dmyoperiodic-nonrigid(1) Run a registration of a series of 2D images.
mia-2dmyopgt-nonrigid(1) Run a registration of a series of 2D images.
mia-2dmyoserial-nonrigid(1) Run a serial registration of a series of 2D images.
mia-2dmyoseries-compdice(1) Evaluate the dice index between segmentations.
mia-2dmyoseries-dice(1) Evaluate the dice index between segmentations.
mia-2dmyoset-all2one-nonrigid(1) Non-linear registration of a series of 2D images.
mia-2dsegcompare(1) Evaluate the Hausdorff distance between segmentations.
mia-2dseghausdorff(1) Evaluate the Hausdorff distance between segmentations.
mia-2dsegment-ahmed(1) Run a fuzzy c-means segmentation of a 2D image.
mia-2dsegment-fuzzyw(1) Run a fuzzy c-means segmentation of a 2D image.
mia-2dsegment-local-cmeans(1) Run a c-means segmentation of a 2D image.
mia-2dsegment-local-kmeans(1) Run a k-means segmentation of a 2D image.
mia-2dsegment-per-pixel-kmeans(1) Run a k-means segmentation of a 2D image.
mia-2dsegmentcropbox(1) Evaluate a crop-box around a manual segmentation.
mia-2dsegseriesstats(1) Evaluate time-intensity curves in masked regions of image series.
mia-2dsegshift(1) Translate a segmentation by the given amount.
mia-2dsegshiftperslice(1) Translate a segmentation by the given amount.
mia-2dseries-mincorr(1) Evaluate minimal correlation of time-intensity curves.
mia-2dseries-sectionmask(1) Evaluate masks from a segmentation.
mia-2dseries-segdistance(1) Evaluate mean distance between segmentations.
mia-2dseries2dordermedian(1) Evaluate time-intensity median 2nd order derivative of a series.
mia-2dseries2sets(1) Combine images of a series to sets.
mia-2dseriescorr(1) Evaluate the time-intensity correlation in a series of images.
mia-2dseriesgradMAD(1) Evaluate the time-intensity gradient MAD in a series of images.
mia-2dseriesgradvariation(1) Evaluate the time-intensity gradient variation in a series of images.
mia-2dserieshausdorff(1) Evaluate Hausdorff distance between segmentation sets.
mia-2dseriessmoothgradMAD(1) Evaluate pixel-wise time-intensity gradient of a 2D image series.
mia-2dseriestovolume(1) Create a 3D volume from a segmentation series.
mia-2dstack-cmeans-presegment(1) Pre-classify the input image series by using a c-means estimator.
mia-2dstackfilter(1) Filter a series of 2D images in a 3D fashion.
mia-2dto3dimage(1) Combine a series of 2D images to a volume.
mia-2dto3dimageb(1) Combine a series of 2D images to a volume.
mia-2dtrackpixelmovement(1) Track positions in 2D.
mia-2dtransform(1) Transform a 2D image.
mia-2dtransformation-to-strain(1) Green strain tensor.
mia-3dbinarycombine(1) Combine two binary images.
mia-3dbrainextractT1(1) Extract the brain from a 3D T1 MRI head image.
mia-3dcombine-imageseries(1) Combine images.
mia-3dcombine-mr-segmentations(1) Combine segmentations.
mia-3dcost(1) Evaluate similarity of two 3D images.
mia-3dcost-translatedgrad(1) Evaluate the cost gradient between two images and convert it to a spline.
mia-3dcrispsegment(1) Label segmentation according to probabilities.
mia-3ddeform(1) Transform a 3D image by means of a vector field.
mia-3ddistance(1) Evaluate the distance between two binary shapes.
mia-3ddistance-stats(1) Evaluate distance statistics for two labeled images.
mia-3deval-transformquantity(1) Evaluate derivative of a transformation.
mia-3dfield2norm(1) Evaluate the norm image of a 3D vector field.
mia-3dfluid(1) Fluid dynamic 3D registration.
mia-3dfluid-syn-registration(1) Non-linear registration of 3D images by using a diffeomorphic SyN reg‐.
mia-3dforce(1) Evaluate the registration force between two 3D images.
mia-3dfuzzysegment(1) Fuzzy c-means segmentation of a 3D image.
mia-3dgetsize(1) Print the dimensions of a 3D image.
mia-3dgetslice(1) Extract slices from a 3D image.
mia-3dimageaddattributes(1) Add attributes to the meta data of a 3D image.
mia-3dimagecombine(1) Combine two 3D images.
mia-3dimagecreator(1) Create a synthetic 3D image.
mia-3dimagefilter(1) Filter a 3D images.
mia-3dimagefilterstack(1) Filter a series of 3D images.
mia-3dimageselect(1) Select one image from multi-image file.
mia-3dimagestatistics-in-mask(1) Evaluate statistics within a masked region of the input data.
mia-3dimagestats(1) Evaluate some image statistics.
mia-3disosurface-from-stack(1) Extract an ist-surface froma a 3D image.
mia-3disosurface-from-volume(1) Extract an ist-surface froma a 3D image.
mia-3dlandmarks-distances(1) Evaluate per landmark distances between 3D landmark sets.
mia-3dlandmarks-transform(1) Transform 3D landmark positions.
mia-3dlerp(1) Linearly combine two 3D images.
mia-3dmany2one-nonrigid(1) Registration of series of 3D images.
mia-3dmaskseeded(1) Mask an area by seeded region growing.
mia-3dmotioncompica-nonrigid(1) Non-linear registration of a series of 3D images.
mia-3dnonrigidreg(1) Non-linear registration of 3D images.
mia-3dnonrigidreg-alt(1) Non-linear registration of 3D images.
mia-3dprealign-nonrigid(1) Registration of a series of 3D images.
mia-3dpropose-boundingbox(1) Evaluate a bounding box for the image.
mia-3drigidreg(1) Linear registration of 3D images.
mia-3dsegment-ahmed(1) Run a fuzzy c-means segmentation of a 3D image.
mia-3dsegment-local-cmeans(1) Run a c-means segmentation of a 3D image.
mia-3dserial-nonrigid(1) Serial registration of 3D images.
mia-3dseries-track-intensity(1) Track intensities of pixels in series of 3D images.
mia-3dtrackpixelmovement(1) Track positions in 3D.
mia-3dtransform(1) Transform a 3D image.
mia-3dtransform2vf(1) Create Vectorfield from a transformation.
mia-3dvectorfieldcreate(1) 3D vector field creation.
mia-3dvf2transform(1) Convert a 3D vectorfield from a 3D transformation.
mia-3dvfcompare(1) Compare two Vectorfields.
mia-cmeans(1) C-means classification of a histogram.
mia-filenumberpattern(1) File name number pattern analysis.
mia-labelsort(1) Create sorted histogram mapping.
mia-mesh-deformable-model(1) Fit a mesh by using a deformable model.
mia-mesh-to-maskimage(1) Create a binary mask from the mesh surfac.
mia-meshdistance-to-stackmask(1) Evaluate the distance between a binary shape given as reference and a.
mia-meshfilter(1) Run filters on a 3D mesh.
mia-multihist(1) Histogram of a series of 2D images.
mia-myowavelettest(1) Wavelet based curve analysis.
mia-plugin-help(1) Print help about plug-in groups.
mia-raw2image(1) Convert raw data into a 2D image.
mia-raw2volume(1) Convert raw data into a 3D image.
mia-wavelettrans(1) Column wise wavelet transform.
mira(1) The Genome and EST Sequence Assembly System.
mocha(1) Simple, flexible, fun test framework.
mountsnoop-bpfcc(8) Trace mount() and umount() syscalls. Uses Linux eBPF/bcc.
mysqld_qslower-bpfcc(8) Trace MySQL server queries slower than a threshold.
netload(1) Network device load monitor.
nfsdist-bpfcc(8) Summarize NFS operation latency. Uses Linux eBPF/bcc.
nfsslower-bpfcc(8) Trace slow NFS file operations, with per-event details.
nvtv(1x) GUI to control TV output hardware settings.
offcputime-bpfcc(8) Summarize off-CPU time by kernel stack trace. Uses Linux eBPF/bcc.
offwaketime-bpfcc(8) Summarize blocked time by off-CPU stack + waker stack. Uses Linux eBPF/bcc.
oomkill-bpfcc(8) Trace oom_kill_process(). Uses Linux eBPF/bcc.
opensnoop-bpfcc(8) Trace open() syscalls. Uses Linux eBPF/bcc.
opensnoop-perf(8) Trace open() syscalls with file details. Uses Linux ftrace.
pdfcrack(1) Password recovery tool for PDF-files.
peet(1) Piped reverse tee: read from many file descriptors and copy to one.
perf-stat-hist-perf(8) Histogram summary of tracepoint values. Uses Linux perf_events.
pidpersec-bpfcc(8) Count new processes (via fork()). Uses Linux eBPF/bcc.
pipexec(1) Create a directed graph of processes and pipes.
plsense(1) Omni completion tool for Perl.
posh(1) Policy-compliant Ordinary SHell.
procenv(1) Display process environment details.
profile-bpfcc(8) Profile CPU usage by sampling stack traces. Uses Linux eBPF/bcc.
ptee(1) Piped tee: read from one file descriptor and copy to many.
qd-config(1) Determine flags for compilation and linking.
reset-ftrace-perf(8) Reset state of ftrace, disabling all tracing. Written for Linux ftrace.
reset-trace-bpfcc(8) Reset the state of tracing.
rrep(1) Replace patterns in files.
rsakeyfind(1) Locates BER-encoded RSA private keys in memory images.
runqlat-bpfcc(8) Run queue (scheduler) latency as a histogram.
runqlen-bpfcc(8) Scheduler run queue length as a histogram.
saint-int-ctrl(1) Support continuous measurements in SAINT.
saint-reformat(1) Imputs missing data and cleans up duplicate entries.
saint-spc-ctrl(1) Run SAINT with control data.
saint-spc-noctrl-matrix(1) Run SAINT for a (large-scale, matrix-formatted) dataset without control purification.
slabratetop-bpfcc(8) Kernel SLAB/SLUB memory cache allocation rate top. Uses Linux BPF/bcc.
softirqs-bpfcc(8) Measure soft IRQ (soft interrupt) event time. Uses Linux eBPF/bcc.
spamprobe(1) A Bayesian spam filter.
sslsniff-bpfcc(8) Print data passed to OpenSSL. Uses Linux eBPF/bcc.
stackcount-bpfcc(8) Count function calls and their stack traces. Uses Linux eBPF/bcc.
statsnoop-bpfcc(8) Trace stat() syscalls. Uses Linux eBPF/bcc.
syncsnoop-bpfcc(8) Trace sync() syscall. Uses Linux eBPF/bcc.
syrthes-post(1) Post-processor for the parallel version of SYRTHES.
syrthes-pp(1) Pre-processor for SYRTHES parallel version.
syrthes-ppfunc(1) Preliminary traitement of data file functions for SYRTHES.
syscount-bpfcc(8) Summarize syscall counts and latencies.
syscount-perf(8) Count system calls. Uses Linux perf_events.
tcpaccept-bpfcc(8) Trace TCP passive connections (accept()). Uses Linux eBPF/bcc.
tcpconnect-bpfcc(8) Trace TCP active connections (connect()). Uses Linux eBPF/bcc.
tcpconnlat-bpfcc(8) Trace TCP active connection latency. Uses Linux eBPF/bcc.
tcplife-bpfcc(8) Trace TCP sessions and summarize lifespan. Uses Linux eBPF/bcc.
tcpretrans-bpfcc(8) Trace TCP retransmits and TLPs. Uses Linux eBPF/bcc.
tcpretrans-perf(8) Show TCP retransmits, with address and other details. Uses Linux ftrace.
tcptop-bpfcc(8) Summarize TCP send/recv throughput by host. Top for TCP.
tcptracer-bpfcc(8) Trace TCP established connections. Uses Linux eBPF/bcc.
tplist-bpfcc(8) Display kernel tracepoints or USDT probes and their formats.
tpoint-perf(8) Trace a given tracepoint. Static tracing. Uses Linux ftrace.
trace-bpfcc(8) Trace a function and print its arguments or return value, optionally evaluating a filter. Uses Linux.
ttysnoop-bpfcc(8) Watch output from a tty or pts device. Uses Linux eBPF/bcc.
ucalls-bpfcc(8) Summarize method calls from high-level languages and.
uflow-bpfcc(8) Print a flow graph of method calls in high-level languages.
ugc-bpfcc(8) Trace garbage collection events in high-level languages.
uobjnew-bpfcc(8) Summarize object allocations in high-level languages.
uprobe-perf(8) Trace a given uprobe definition. User-level dynamic tracing. Uses Linux ftrace. EXPERIMENTAL.
ustat-bpfcc(8) Activity stats from high-level languages.
utfout(1) Utility for producing UTF-8 output to standard streams and terminal.
uthreads-bpfcc(8) Trace thread creation events in Java or pthreads.
vfscount-bpfcc(8) Count VFS calls ("vfs_*"). Uses Linux eBPF/bcc.
vfsstat-bpfcc(8) Statistics for some common VFS calls. Uses Linux eBPF/bcc.
vinagre(1) A remote desktop viewer for the GNOME Desktop.
wakeuptime-bpfcc(8) Summarize sleep to wakeup time by waker kernel stack. Uses Linux eBPF/bcc.
xdot(1) Interactive viewer for Graphviz dot files.
xfsdist-bpfcc(8) Summarize XFS operation latency. Uses Linux eBPF/bcc.
xfsslower-bpfcc(8) Trace slow xfs file operations, with per-event details.
xtermset(1) Change settings of an xterm.
zfsdist-bpfcc(8) Summarize ZFS operation latency. Uses Linux eBPF/bcc.
zfsslower-bpfcc(8) Trace slow zfs file operations, with per-event details.
zomg(1) Libre.fm submission and radio client.
zomghelper(1) Ogg Vorbis/Opus metadata reader.