ACE::GRAPHICS::GLYPH::TRANSCRIPT(3PM) - Linux man page online | Library functions
The "gene" glyph.
Chapter
2017-11-24
Ace::Graphics::Glyph::transcripUsermContributed Perl DocumenAce::Graphics::Glyph::transcript(3pm)
@cshl.org>.
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same
terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.
NAME
Ace::Graphics::Glyph::transcript - The "gene" glyphSYNOPSIS
See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.DESCRIPTION
This glyph draws a series of filled rectangles connected by up-angled connectors or "hats". The rectangles indicate exons; the hats are introns. The direction of transcription is indicated by a small arrow at the end of the glyph, rightward for the + strand. The feature must respond to the exons() and optionally introns() methods, or it will default to the generic display. Implied introns (not returned by the introns() method) are drawn in a contrasting color to explicit introns. OPTIONS In addition to the common options, the following glyph-specific option is recognized: Option Description Default ------ ----------- ------- -implied_intron_color The color to use for gaps gray not returned by the introns() method. -draw_arrow Whether to draw arrowhead true indicating direction of transcription.BUGS
Please report them.SEE ALSO
Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow, Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments, Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,AUTHOR
Lincoln Stein <@cshl.org>.
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same
terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.