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ABIVIEW(1E) - Linux man page online | User commands

Display the trace in an ABI sequencer file.

Chapter
05/11/2012
ABIVIEW(1e) EMBOSS Manual for Debian ABIVIEW(1e)

NAME

abiview - Display the trace in an ABI sequencer file

SYNOPSIS

abiview -infile infile -outseq seqout -graph xygraph [-startbase integer] [-endbase integer] -separate boolean [-yticks boolean] [-sequence boolean] [-window integer] [-bases string] abiview -help

DESCRIPTION

abiview is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Data retrieval:Sequence data,Display" command group(s).

OPTIONS

Input section -infile infile Output section -outseq seqout -graph xygraph -startbase integer -endbase integer Last sequence base to report or display. If the default is set to zero then the value of this is taken as the maximum number of bases. -separate boolean Default value: N -yticks boolean Default value: N -sequence boolean Default value: Y -window integer Default value: 40 -bases string Default value: GATC

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

abiview is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <@lists.alioth.debian.org> Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
EMBOSS 6.4.0 05/11/2012 ABIVIEW(1e)
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