SIMPLE SOLUTIONS

AEVOL - reference manual online

An in silico experimental evolution platform.

Chapter
July 2014
AEVOL(1)                                   User Manual                                   AEVOL(1)

/#test with man −l <file>

NAME aevol - an in silico experimental evolution platform
SYNOPSIS aevol_misc_extract -h | --help aevol_misc_extract -V | --version aevol_misc_extract [-r GENER | -p POP_FILE] [-t PHEN_FILE] [-s SEQ_FILE] [-g NUM_GU] [-b]
DESCRIPTION Aevol is a simulation platform that allows one to let populations of digital organisms evolve in different conditions and study experimentally the mechanisms responsible for the structuration of the genome and the transcriptome. aevol_misc_extract extracts the genotype and/or data about the phenotype of individuals in the pro‐ vided population and write them into text files easy to parse with e.g. matlab.
OPTIONS -h, --help print help, then exit -V, --version print version number, then exit -r GENER read generation GENER from a full aevol backup -p POP_FILE read the population saved in population file POP_FILE -t PHEN_FILE extract and save some infos about the phenotypes of the individuals to file PHEN_FILE -s SEQ_FILE extract and save the sequences of the individuals to file SEQ_FILE -g num_gu only treat this genetic unit (by default: treat all genetic units) -b only treat the best individual
SEE ALSO ae_misc_lineage, aevol_create, aevol_modify, aevol_propagate, aevol_run
aevol 4.4 July 2014 AEVOL(1)