AEVOL_MISC_ROBUSTNESS(1) - man page online | user commands

AEVOL(1)                                   User Manual                                   AEVOL(1)

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NAME
       aevol - an in silico experimental evolution platform

SYNOPSIS
       aevol_misc_robustness -h | --help
       aevol_misc_robustness -V | --version
       aevol_misc_robustness -g GENER [-n NBCHILDREN] [-i INDEX | -r RANK]

DESCRIPTION
       Aevol is a simulation platform that allows one to let populations of digital organisms
       evolve in different conditions and study experimentally the mechanisms responsible for the
       structuration of the genome and the transcriptome.

       aevol_misc_robustness
              computes the replication statistics of all the individuals of a given generation,
              like the proportion of neutral, beneficial, deleterious offsprings. This is done by
              simulating NBCHILDREN replications for each individual (1000 replications by
              default), with its mutation, rearrangement and transfer rates. Depending on those
              rates and genome size, there can be several mutations per replication. Those global
              statistics are written in stat/robustness_GENER.out, with one line per individual
              in the specified generation.  The program also outputs detailed statistics for one
              of the individuals (the best one by default). The detailed statistics for this
              individual are written in stats/replication_GENER.out, with one line per simulated
              child of this particular individual.

OPTIONS
       -h, --help
              print help, then exit

       -V, --version
              print version number, then exit

       -g, --gener GENER
              specify the generation number for which the robustness statistics are desired

       -n, --nb-children NBCHILDREN
              specify the number of reproductions to simulate for each individual

       -i, --index INDEX
              specify the index (ID in current generation) of the individual for whom detailed
              reproduction statistics are desired

       -r, --rank RANK
              specify the rank of the individual for whom detailed reproduction statistics are
              desired

SEE ALSO
       aevol_create, aevol_modify, aevol_propagate, aevol_run, aevol_misc_view_generation,
       aevol_misc_create_eps

aevol 4.4                                   July 2014                                    AEVOL(1)