ALL_DISTS(1) User Commands ALL_DISTS(1)
all_dists - Given a tree in Newick (*.nh) format, report distances
Given a tree in Newick (*.nh) format, report distances between all pairs of leaves. If
multiple files are given, then distances are computed by averaging across models, and sta‐
tistics describing the errors in the estimates are reported (can be useful for bootstrap‐
ping; see 'phyloBoot --dump-mods').
all_dists <tree.nh> [<tree2.nh> <tree3.nh>...]
Read from tree model (*.mod) file(s) instead of Newick file.
--tree, -t <file>|<string>
Use leaf names from given tree.
Useful when primary files
use numbers rather than names.
--help, -h Print this help message.
all_dists 1.4 May 2016 ALL_DISTS(1)