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ALI2GFF(1) - Linux man page online | User commands

Module to translate a MUMmer output files into gff formatted output.

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Mon, 21 Mar 2005 21:44:15 -0300
ALI2GFF(1) General Commands Manual ALI2GFF(1)

NAME

ali2gff - Module to translate a MUMmer output files into gff formatted output.

SYNOPSIS

ali2gff [-r] [-t <.|0|1|2>] [-x <name>] [-y <name>] [-H] [-f] [-h] <MUMmer_output_file>

OPTIONS

-h, --help Show summary of options. -r Interchange the order of sequences (sequence 1 on y-axis, sequence 2 on x-axis). -t <.|0|1|2> Put label 'frame' in gff output. -x <name> Specify the species name for species1 (default: "Seq1"). -y <name> Specify the species name for species2 (default: "Seq2"). -i Ignore full sequence identities. -f Write output to file.

SEE ALSO

blat2gff(1), gff2aplot(1), parseblast(1), sim2gff(1).

AUTHOR

ali2gff was written by Steffi Gebauer-Jung. This manual page was written by Nelson A. de Oliveira <@gmail.com>, for the Debian project (but may be used by others).
Mon, 21 Mar 2005 21:44:15 -0300 ALI2GFF(1)
This manual Reference Other manuals
ali2gff(1) referred by blat2gff(1) | gff2aplot(1) | parseblast(1) | sim2gff(1)
refer to blat2gff(1) | gff2aplot(1) | parseblast(1) | sim2gff(1)
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