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SIM2GFF(1) - Linux man page online | User commands

Converts SIM file into GFF formatted records.

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Mon, 21 Mar 2005 21:44:15 -0300
SIM2GFF(1) General Commands Manual SIM2GFF(1)

NAME

sim2gff - Converts SIM file into GFF formatted records

SYNOPSIS

sim2gff [-frxyHh] sim_file > gff_file

DESCRIPTION

This manual page documents briefly the sim2gff command. sim2gff is a program written in Perl that converts SIM file into GFF formatted records (for use with gff2aplot and gff2javaplot).

OPTIONS

-h, --help Show summary of options. -f Output is written to a file named <sim_file>.gff. -r Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis). -x <name> Specify the species name for species1 (default: "Seq1"). -y <name> Specify the species name for species2 (default: "Seq2"). -H Use the fasta file headers for species labels.

EXIT STATUS

The following perl-like exit status are returned: 0 Error 1 Successful completion

SEE ALSO

ali2gff(1), blat2gff(1), gff2aplot(1), parseblast(1).

AUTHOR

sim2gff was written by Thomas Wiehe <@imb-jena.de>. This manual page was written by Nelson A. de Oliveira <@gmail.com>, for the Debian project (but may be used by others).
Mon, 21 Mar 2005 21:44:15 -0300 SIM2GFF(1)
This manual Reference Other manuals
sim2gff(1) referred by ali2gff(1) | blat2gff(1) | gff2aplot(1) | parseblast(1)
refer to ali2gff(1) | blat2gff(1) | gff2aplot(1) | parseblast(1)
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