SIMPLE SOLUTIONS

KMO_STATS(7) - Linux man page online | Overview, conventions, and miscellany

Perform basic statistics on a KMOS-conform fits-file.

Chapter
1.4.3
KMO_STATS(7) kmos recipes KMO_STATS(7)

NAME

kmo_stats - Perform basic statistics on a KMOS-conform fits-file

SYNOPSIS

esorex kmo_stats [OPTIONS] FILE.sof

DESCRIPTION

This recipe performs basic statistics on KMOS-conform data-frames of type F2D, F1I, F2I and F3I either with or without noise and RAW. Optionally a 2D mask can be provided to define a region on which the statistics should be calculated on (mask 0: exclude pixel, mask 1: include pixel). A mask can’t be provided for statistics on F1I frames. The output is stored in a vector of length 11. The vector represents following values: 1. Number of pixels 2. Number of finite pixels 3. Mean 4. Standard Deviation 5. Mean with iterative rejection (i.e. mean & sigma are calculated iterati- vely, each time rejecting pixels more than +/-N sigma from the mean) 6. Standard Deviation with iterative rejection 7. Median 8. Mode (i.e. the peak in a histogram of pixel values) 9. Noise (a robust estimate given by the standard deviation from the nega- tive side of the histogram of pixel values) 10. Minimum 11. Maximum The same numerical operations are applied to the noise as with the data itself. BASIC PARAMETERS --ext These parameters specify with extensions to process. The value 0, which is default, calulates all extensions. ADVANCED PARAMETERS --cpos_rej --cneg_rej --citer An iterative sigma clipping is applied in order to calculate the mode (using kmo_stats). For each position all pixels in the spectrum are examined. If they deviate significantly, they will be rejected according to the conditions: val > mean + stdev * cpos_rej and val < mean - stdev * cneg_rej In the first iteration median and percentile level are used. Input files: DO DO KMOS category group Type Explanation Required #Frames -------- ----- ----- ----------- -------- ------- <none or any> - F3I or The datacubes Y 1 F2I or F1I or F2D or B2D or RAW <none or any> - F2I or The mask N 0,1 F2D or B2D or RAW Output files: DO KMOS category Type Explanation -------- ----- ----------- STATS F1I Calculated statistics parameters

OPTIONS

--ext <long> The extension the stats should be calculated of. Zero is default and calculates the stats of all extensions (long; default: 0). The full name of this option for the EsoRex configuration file is kmos.kmo_stats.ext [default = 0]. --cpos_rej <float> The positive rejection threshold for kappa-sigma-clipping (sigma). (float; default: 3.0). The full name of this option for the EsoRex configuration file is kmos.kmo_stats.cpos_rej [default = 3.0]. --cneg_rej <float> The negative rejection threshold for kappa-sigma-clipping (sigma). (float; default: 3.0). The full name of this option for the EsoRex configuration file is kmos.kmo_stats.cneg_rej [default = 3.0]. --citer <long> The number of iterations for kappa-sigma-clipping. (long; default: 3). The full name of this option for the EsoRex configuration file is kmos.kmo_stats.citer [default = 3]. Note that it is possible to create a configuration file containing these options, along with suitable default values. Please refer to the details provided by the 'esorex --help' command.

SEE ALSO

The full documentation for the kmos pipeline can be downloaded as a PDF file using the following URL: ftp://ftp.eso.org/pub/dfs/pipelines/kmos/kmos-pipeline-manual-2.9.pdf An overview over the existing ESO pipelines can be found on the web page http://www.eso.org/sci/software/pipelines/. Basic documentation about the EsoRex program can be found at the esorex (1) man page. It is possible to call the pipelines from python using the python-cpl package. See http://packages.python.org/python-cpl/index.html for further information. The other recipes of the kmos pipeline are kmo_arithmetic(7), kmo_copy(7), kmo_fit_pro‐ file(7), kmo_fits_strip(7), kmo_make_image(7), kmo_noise_map(7), kmo_rotate(7), kmo_shift(7), kmo_sky_mask(7), kmos_combine(7), kmos_dark(7), kmos_extract_spec(7), kmos_flat(7), kmos_gen_reflines(7), kmos_gen_telluric(7), kmos_illumination(7), kmos_reconstruct(7), kmos_sci_red(7), kmos_sky_tweak(7), kmos_std_star(7), kmos_test(7), kmos_wave_cal(7)

VERSION

kmo_stats 1.4.3

AUTHOR

Alex Agudo Berbel <@eso.org>

BUG REPORTS

Please report any problems to @eso.org. Alternatively, you may send a report to the ESO User Support Department <@eso.org>.

LICENSE

This file is part of the CRIRES Instrument Pipeline Copyright (C) 2002,2003 European Southern Observatory This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either ver‐ sion 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
kmo_stats 1.4.3 KMO_STATS(7)
This manual Reference Other manuals
kmo_stats(7) referred by kmo_arithmetic(7) | kmo_copy(7) | kmo_fit_profile(7) | kmo_fits_strip(7) | kmo_make_image(7) | kmo_noise_map(7) | kmo_rotate(7) | kmo_shift(7) | kmo_sky_mask(7) | kmos_combine(7) | kmos_dark(7) | kmos_extract_spec(7) | kmos_flat(7) | kmos_gen_reflines(7) | kmos_gen_telluric(7) | kmos_illumination(7) | kmos_reconstruct(7) | kmos_sci_red(7) | kmos_sky_tweak(7) | kmos_std_star(7)
refer to kmo_arithmetic(7) | kmo_copy(7) | kmo_fits_strip(7) | kmo_make_image(7) | kmo_noise_map(7) | kmo_rotate(7) | kmo_shift(7) | kmo_sky_mask(7) | kmos_combine(7) | kmos_dark(7) | kmos_extract_spec(7) | kmos_flat(7) | kmos_gen_reflines(7) | kmos_gen_telluric(7) | kmos_illumination(7) | kmos_reconstruct(7) | kmos_sci_red(7) | kmos_sky_tweak(7) | kmos_std_star(7) | kmos_test(7)
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