SIMPLE SOLUTIONS

STRANSLATE(1) - man page online | user commands

Translate a nucleic acid sequence to protein ORFs.

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Mon, 01 Aug 2005 15:28:08 -0300
STRANSLATE(1)                        General Commands Manual                        STRANSLATE(1)

NAME stranslate - translate a nucleic acid sequence to protein ORFs
SYNOPSIS stranslate [-options] <seqfile>
DESCRIPTION This manual page documents briefly the stranslate command. stranslate is a program that creates a file of all possible protein ORFs, given an input nucleic acid sequence.
OPTIONS Available options: -a Translate in full, with stops; no individual ORFs. -h Help; show brief usage and version info. -l <minlen> Report only ORFs greater than minlen (default 20). -m Require ORFs to start with AUG/Met. -o <outfile> Save results in output file. -q Quiet; silence banner, for piping or redirection. -s <stopchar> With -a, set stop character to <stopchar>. --tetrahymena Use the Tetrahymena/Oxytricha genetic code. --watson Only do the top strand (frames 0/1/2). --crick Only do the bottom strand (frames 3/4/5).
NOTE TO DEBIAN USERS The original program name is translate. It was renamed to stranslate to avoid conflict with another program of the same name.
SEE ALSO afetch(1), alistat(1), compalign(1), compstruct(1), revcomp(1), seqsplit(1), seqstat(1), sfetch(1), shuffle(1), sindex(1), sreformat(1), weight(1).
AUTHOR Sean Eddy HHMI/Department of Genetics Washington University School of Medicine 4444 Forest Park Blvd., Box 8510 St Louis, MO 63108 USA Phone: 1-314-362-7666 FAX : 1-314-362-2157 Email: @genetics.wustl.edu This manual page was written by Nelson A. de Oliveira <@gmail.com>, for the Debian project (but may be used by others).
Mon, 01 Aug 2005 15:28:08 -0300 STRANSLATE(1)
This manual Reference Other manuals
stranslate(1) referred by afetch(1) | alistat(1) | compalign(1) | compstruct(1) | revcomp(1) | seqsplit(1) | seqstat(1) | sfetch(1) | shuffle(1) | sindex(1) | sreformat(1) | weight(1)
refer to afetch(1) | alistat(1) | compalign(1) | compstruct(1) | revcomp(1) | seqsplit(1) | seqstat(1) | sfetch(1) | shuffle(1) | sindex(1) | sreformat(1) | weight(1)