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WEIGHT(1) - man page online | user commands

Calculates sequence weights for an alignment.

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Mon, 01 Aug 2005 15:28:08 -0300
WEIGHT(1)                            General Commands Manual                            WEIGHT(1)

NAME weight - calculates sequence weights for an alignment
SYNOPSIS weight [-options] <alignment file>
DESCRIPTION This manual page documents briefly the weight command. weight is a program that calculates weights for a sequence alignment.
OPTIONS Available options: -b <f> Use BLOSUM weighting scheme at <f> fractional identity. -f <f> Filter out seqs w/ fractional ident > <x> [0-1]. -h Help; print version and usage info. -o <file> Save weight-annotated alignment in <outfile>. -p Use position based weight scheme (Henikoff & Henikoff). -s <n> Sample <n> sequences at random into a new alignment. -v Use Voronoi weight scheme (Sibbald & Argos). --informat <s> Specify alignment file format <s>. Allowed formats: SELEX, MSF, Clustal, a2m, PHYLIP. --quiet Suppress verbose banner.
SEE ALSO afetch(1), alistat(1), compalign(1), compstruct(1), revcomp(1), seqsplit(1), seqstat(1), sfetch(1), shuffle(1), sindex(1), sreformat(1), stranslate(1),
AUTHOR Sean Eddy HHMI/Department of Genetics Washington University School of Medicine 4444 Forest Park Blvd., Box 8510 St Louis, MO 63108 USA Phone: 1-314-362-7666 FAX : 1-314-362-2157 Email: @genetics.wustl.edu This manual page was written by Nelson A. de Oliveira <@gmail.com>, for the Debian project (but may be used by others).
Mon, 01 Aug 2005 15:28:08 -0300 WEIGHT(1)
This manual Reference Other manuals
weight(1) referred by afetch(1) | alistat(1) | Bio::Tools::Primer::Assessor::Base(3pm) | compalign(1) | compstruct(1) | revcomp(1) | seqsplit(1) | seqstat(1) | sfetch(1) | shuffle(1) | sindex(1) | sreformat(1) | stranslate(1)
refer to afetch(1) | alistat(1) | compalign(1) | compstruct(1) | revcomp(1) | seqsplit(1) | seqstat(1) | sfetch(1) | shuffle(1) | sindex(1) | sreformat(1) | stranslate(1)