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XSH_MBIAS(7) - Linux man page online | Overview, conventions, and miscellany

Create the master bias frame.

Chapter
2.9.3
XSH_MBIAS(7) xshoo recipes XSH_MBIAS(7)

NAME

xsh_mbias - Create the master bias frame

SYNOPSIS

esorex xsh_mbias [OPTIONS] FILE.sof

DESCRIPTION

This recipe creates a master bias frame by computing the median of all input bias frames. Input Frames : - A set of n RAW frames (Format=RAW, n >=3, Tag = BIAS_arm) - [OPTIONAL] A map of non linear bad pixels (Format=QUP, Tag = BP_MAP_NL_arm) - [OPTIONAL] A map of reference bad pixels (Format = QUP,RAW, Tag = BP_MAP_RP_arm) Prod‐ ucts : - A master bias frame (Format=PRE, PRO.CATG = MASTER_BIAS_arm)

OPTIONS

--keep-temp <str> If ´no´, temporary files are deleted. (str; default: ´no´). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.keep-temp [default = no]. --debug-level <str> Additional xshooter debug level. One of ´none´, ´low´, ´medium´, ´high´ (str; default: ´none´). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.debug-level [default = none]. --time-stamp <bool> Add timestamp to product file name. (bool; default: False). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.time-stamp [default = False]. --decode-bp <long> Integer representation of the bits to be considered bad when decoding the bad pixel mask pixel values. Most frequent codes relevant for the user: 0: good pixel, 8: pick-up noise, 16: cosmic-ray removed, 32: cosmic-ray unremoved, 128: cal‐ ibration file defect, 256: hot pixel, 512: dark pixel, 4096: A/D converted sat‐ uration, 32768: non linear pixel, 1048576: extrapolated flux in NIR, 4194304: Interpolated flux during extraction. (long; default: 2144337919). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.decode-bp [default = 2144337919]. --stack-method <str> Method used to build master frame. (str; default: ´median´). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.stack-method [default = median]. --klow <float> Kappa used to clip low level values, when method is set to ´mean´ (float; default: 5.0). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.klow [default = 5.0]. --khigh <float> Kappa used to clip high level values, when method is set to ´mean´ (float; default: 5.0). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.khigh [default = 5.0]. --fpn_llx <long> Lower left reference area X coordinate for Fixed Pattern Noise computation (long; default: 10). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.fpn_llx [default = 10]. --fpn_lly <long> Lower left reference area Y coordinate for Fixed Pattern Noise computation (long; default: 10). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.fpn_lly [default = 10]. --fpn_urx <long> Upper right reference area X coordinate for Fixed Pattern Noise computation (long; default: 1024). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.fpn_urx [default = 1024]. --fpn_ury <long> Upper right reference area Y coordinate for Fixed Pattern Noise computation (long; default: 1024). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.fpn_ury [default = 1024]. --fpn_hsize <long> Sample size for Fixed Pattern Noise computation (long; default: 10). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.fpn_hsize [default = 10]. --fpn_nsamples <long> Number of sampling points for Fixed Pattern Noise computation (long; default: 100). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.fpn_nsamples [default = 100]. --ron_method <str> RON computation method (str; default: ´ALL´). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ron_method [default = ALL]. --random_sizex <long> Region X size for random computation (long; default: 10). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.random_sizex [default = 10]. --random_nsamples <long> Number of random samples (long; default: 100). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.random_nsamples [default = 100]. --ref1_llx <long> Lower left X of reference region (long; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref1_llx [default = -1]. --ref1_lly <long> Lower left Y of reference region (long; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref1_lly [default = -1]. --ref1_urx <long> Upper right X of reference region (long; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref1_urx [default = -1]. --ref1_ury <long> Upper right Y of reference region (long; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref1_ury [default = -1]. --ref2_llx <long> Lower left X of reference region (long; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref2_llx [default = -1]. --ref2_lly <long> Lower left Y of reference region (long; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref2_lly [default = -1]. --ref2_urx <long> Upper right X of reference region (long; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref2_urx [default = -1]. --ref2_ury <long> Upper right Y of reference region (long; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref2_ury [default = -1]. --stacking_ks_low <long> Lower value of kappa-sigma clip in stacking (long; default: 3). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.stacking_ks_low [default = 3]. --stacking_ks_iter <long> Number of iterations in kappa-sigma clip in stacking (long; default: 25). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.stack‐ ing_ks_iter [default = 25]. --struct_refx <long> Reference X value to compute structure (long; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.struct_refx [default = -1]. --struct_refy <long> Reference Y value to compute structure (long; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.struct_refy [default = -1]. Note that it is possible to create a configuration file containing these options, along with suitable default values. Please refer to the details provided by the 'esorex --help' command.

SEE ALSO

The full documentation for the xshoo pipeline can be downloaded as a PDF file using the following URL: ftp://ftp.eso.org/pub/dfs/pipelines/xshoo/xshoo-pipeline-manual-12.1.pdf An overview over the existing ESO pipelines can be found on the web page http://www.eso.org/sci/software/pipelines/. Basic documentation about the EsoRex program can be found at the esorex (1) man page. It is possible to call the pipelines from python using the python-cpl package. See http://packages.python.org/python-cpl/index.html for further information. The other recipes of the xshoo pipeline are xsh_2dmap(7), xsh_cfg_recover(7), xsh_flex‐ comp(7), xsh_geom_ifu(7), xsh_lingain(7), xsh_mdark(7), xsh_mflat(7), xsh_orderpos(7), xsh_predict(7), xsh_respon_slit_nod(7), xsh_respon_slit_offset(7), xsh_respon_slit_stare(7), xsh_scired_ifu_offset(7), xsh_scired_ifu_offset_drl(7), xsh_scired_ifu_stare(7), xsh_scired_ifu_stare_drl(7), xsh_scired_slit_nod(7), xsh_scired_slit_offset(7), xsh_scired_slit_stare(7), xsh_util_physmod(7), xsh_wavecal(7)

VERSION

xsh_mbias 2.9.3

AUTHOR

P.Goldoni, L.Guglielmi, R. Haigron, F. Royer, D. Bramich, A. Modigliani <@eso.org>

BUG REPORTS

Please report any problems to @eso.org. Alternatively, you may send a report to the ESO User Support Department <@eso.org>.

LICENSE

This file is part of the X-shooter Instrument Pipeline Copyright (C) 2006 European South‐ ern Observatory This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either ver‐ sion 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
xsh_mbias 2.9.3 XSH_MBIAS(7)
This manual Reference Other manuals
xsh_mbias(7) referred by xsh_2dmap(7) | xsh_cfg_recover(7) | xsh_flexcomp(7) | xsh_geom_ifu(7) | xsh_lingain(7) | xsh_mdark(7) | xsh_mflat(7) | xsh_orderpos(7) | xsh_predict(7) | xsh_respon_slit_nod(7) | xsh_respon_slit_offset(7) | xsh_respon_slit_stare(7) | xsh_scired_ifu_offset(7) | xsh_scired_ifu_offset_drl(7) | xsh_scired_ifu_stare(7) | xsh_scired_ifu_stare_drl(7) | xsh_scired_slit_nod(7) | xsh_scired_slit_offset(7) | xsh_scired_slit_stare(7) | xsh_util_physmod(7)
refer to xsh_2dmap(7) | xsh_cfg_recover(7) | xsh_geom_ifu(7) | xsh_lingain(7) | xsh_mdark(7) | xsh_mflat(7) | xsh_orderpos(7) | xsh_predict(7) | xsh_respon_slit_nod(7) | xsh_respon_slit_offset(7) | xsh_respon_slit_stare(7) | xsh_scired_ifu_offset(7) | xsh_scired_ifu_offset_drl(7) | xsh_scired_ifu_stare(7) | xsh_scired_ifu_stare_drl(7) | xsh_scired_slit_nod(7) | xsh_scired_slit_offset(7) | xsh_scired_slit_stare(7) | xsh_util_physmod(7) | xsh_wavecal(7)
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